Collections / geo-gse269906

geo-gse269906

Datasets12

Size~2.9 GB

AssayStereo-seq

Samplehuman · prefrontal cortex

KindOther

Flag a data issue

Download the whole collection

Client Lamin CLI

Python · sddb client

from sddb import Catalog

cohort = Catalog().collection("geo-gse269906")
cohort.members        # the 12 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")

Install (Python 3.12+) Docs →

Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse269906")
coll.ordered_artifacts.to_dataframe()   # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

Install (Python 3.12+) Docs →

Shell

# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse269906 --dest data/

Install (Python 3.12+) Docs →

Licenses: 12 NCBI GEO policy

Member datasets · 12

Stereo-seq

Human prefrontal cortex

GSM8330067

human prefrontal cortex Alzheimer disease 245 MB 84,904 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size245 MB

Obs84,904

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330063

human prefrontal cortex Alzheimer disease 122 MB 98,835 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size122 MB

Obs98,835

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330071

human prefrontal cortex 188 MB 49,729 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size188 MB

Obs49,729

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330064

human prefrontal cortex Alzheimer disease 92.4 MB 72,490 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size92.4 MB

Obs72,490

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330060

human prefrontal cortex Alzheimer disease 237 MB 93,793 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size237 MB

Obs93,793

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330066

human prefrontal cortex 300 MB 86,345 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size300 MB

Obs86,345

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330062

human prefrontal cortex Alzheimer disease 133 MB 88,683 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size133 MB

Obs88,683

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330069

human prefrontal cortex 299 MB 68,943 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size299 MB

Obs68,943

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330068

human prefrontal cortex 294 MB 80,655 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size294 MB

Obs80,655

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330065

human prefrontal cortex 328 MB 80,404 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size328 MB

Obs80,404

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330070

human prefrontal cortex 420 MB 82,056 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

Size420 MB

Obs82,056

bronze NCBI GEO policy

Stereo-seq

Human prefrontal cortex

GSM8330061

human prefrontal cortex Alzheimer disease 268 MB 80,183 obs bronze NCBI GEO policy

TechnologyStereo-seq

Organismhuman

Tissueprefrontal cortex

ConditionAlzheimer disease

Size268 MB

Obs80,183

bronze NCBI GEO policy