spatial CUT&Tag
Mouse embryo
GSM8189705
mouse embryo 88.6 MB 2,500 pixels bronze H&E NCBI GEO policy
Technologyspatial CUT&Tag
Organismmouse
Tissueembryo
Pixels2,500
bronze H&E NCBI GEO policy
Collections / geo-gse263333
geo-gse263333
Datasets6
Size~1.2 GB
Assaysspatial CUT&Tag · Spatial-Mux-seq
Samplemouse · multiple
KindPublication
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("geo-gse263333")
cohort.members # the 6 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse263333")
coll.ordered_artifacts.to_dataframe() # the 6 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse263333 --dest data/Licenses: 6 NCBI GEO policy
About the study
Multiplexed spatial mapping of chromatin features, transcriptome and proteins in tissues.
Read the abstract at the source →Member datasets · 6
spatial CUT&Tag
Mouse embryo
GSM8189704
mouse embryo 240 MB 2,500 pixels bronze H&E NCBI GEO policy
Technologyspatial CUT&Tag
Organismmouse
Tissueembryo
Pixels2,500
bronze H&E NCBI GEO policy
Spatial-Mux-seq
Mouse brain
GSM8189711
mouse brain 64.3 MB 2,500 pixels silver H&E NCBI GEO policy
TechnologySpatial-Mux-seq
Organismmouse
Tissuebrain
Pixels2,500
silver H&E NCBI GEO policy
Spatial-Mux-seq
Mouse embryo
GSM8494157
mouse embryo 242 MB 10,000 pixels silver H&E NCBI GEO policy
TechnologySpatial-Mux-seq
Organismmouse
Tissueembryo
Pixels10,000
silver H&E NCBI GEO policy
Spatial-Mux-seq
Mouse embryo
GSM8189706
mouse embryo 570 MB 2,500 pixels silver H&E NCBI GEO policy
TechnologySpatial-Mux-seq
Organismmouse
Tissueembryo
Pixels2,500
silver H&E NCBI GEO policy
Spatial-Mux-seq
Mouse embryo
GSM8189708
mouse embryo 39.4 MB 2,500 pixels silver H&E NCBI GEO policy
TechnologySpatial-Mux-seq
Organismmouse
Tissueembryo
Pixels2,500
silver H&E NCBI GEO policy
Cite this collection
No linked publication found — please cite the data source.