Collections / Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]

Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]

The neoadjuvant immune checkpoint blockade therapy only benefits a limited fraction of glioblastoma multiforme (GBM) patients. Thus, targeting other immunomodulators on myeloid cells is an attractive therapeutic option. Here, we performed single-cell RNA sequencing and spatial transcriptomics of GBM patients treated with neoadjuvant anti-PD-1 therapy. We identified unique monocyte-derived tumor-associated macrophage (TAM) subpopulations with functional plasticity that highly expressed the immunosuppressive SIGLEC9 gene and preferentially accumulated in the non-responders to anti-PD-1 treatment. Deletion of Siglece (murine homologue) resulted in significantly restrained tumor development and prolonged survival in mouse models. Mechanistically, targeting Siglece directly activated both CD4+ T cells and CD8+ T cells through antigen presentation, secreted chemokines and co-stimulatory factor interactions. Furthermore, Siglece deletion synergized with anti-PD-1/PD-L1 treatment to improve antitumor efficacy. Our data demonstrated that Siglec-9 is an immune checkpoint molecule on macrophages that can be targeted to enhance anti-PD-1/PD-L1 therapeutic efficacy for GBM treatment.

Datasets20
Size~614 MB
AssayVisium
Samplehuman · brain
KindComparison
Flag a data issue
PMID:37460871 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse235672")
cohort.members        # the 20 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse235672")
coll.ordered_artifacts.to_dataframe()   # the 20 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse235672 --dest data/

Licenses: 20 NCBI GEO policy

Open in Vitessce
Visium
Human brain
GSM7507326
human brain glioblastoma 25.9 MB 1,948 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size25.9 MB
Spots1,948
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507324
human brain glioblastoma 22.9 MB 1,887 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size22.9 MB
Spots1,887
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507311
human brain glioblastoma 24.5 MB 2,587 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size24.5 MB
Spots2,587
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507318
human brain glioblastoma 19.0 MB 1,555 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size19.0 MB
Spots1,555
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507314
human brain glioblastoma 40.9 MB 2,963 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size40.9 MB
Spots2,963
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507312
human brain glioblastoma 25.4 MB 1,883 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size25.4 MB
Spots1,883
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507317
human brain glioblastoma 23.4 MB 2,027 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size23.4 MB
Spots2,027
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507329
human brain glioblastoma 13.3 MB 2,320 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size13.3 MB
Spots2,320
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507325
human brain glioblastoma 42.1 MB 2,578 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size42.1 MB
Spots2,578
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507321
human brain glioblastoma 33.2 MB 2,176 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size33.2 MB
Spots2,176
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507315
human brain glioblastoma 31.0 MB 1,858 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size31.0 MB
Spots1,858
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507322
human brain glioblastoma 36.9 MB 2,494 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size36.9 MB
Spots2,494
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507313
human brain glioblastoma 25.1 MB 1,876 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size25.1 MB
Spots1,876
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507319
human brain glioblastoma 25.7 MB 1,733 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size25.7 MB
Spots1,733
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507327
human brain glioblastoma 27.7 MB 2,149 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size27.7 MB
Spots2,149
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507323
human brain glioblastoma 42.2 MB 2,499 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size42.2 MB
Spots2,499
Magnificationother · 3.759 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507328
human brain glioblastoma 46.8 MB 2,897 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size46.8 MB
Spots2,897
Magnificationother · 3.345 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507330
human brain glioblastoma 33.6 MB 2,751 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size33.6 MB
Spots2,751
Magnificationother · 3.275 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507316
human brain glioblastoma 40.9 MB 2,560 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size40.9 MB
Spots2,560
Magnificationother · 3.759 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human brain
GSM7507320
human brain glioblastoma 33.9 MB 2,253 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissuebrain
Conditionglioblastoma
Size33.9 MB
Spots2,253
Magnificationother · 3.391 µm/px
bronze H&E NCBI GEO policy Open in Vitessce

Cite this collection

doi.org/10.1038/s43018-023-00598-9 ↗
BibTeX
@article{Mei_2023,
  title = {Siglec-9 acts as an immune-checkpoint molecule on macrophages in glioblastoma, restricting T-cell priming and immunotherapy response},
  volume = {4},
  ISSN = {2662-1347},
  url = {http://dx.doi.org/10.1038/s43018-023-00598-9},
  DOI = {10.1038/s43018-023-00598-9},
  number = {9},
  journal = {Nature Cancer},
  publisher = {Springer Science and Business Media LLC},
  author = {Mei, Yan and Wang, Xiumei and Zhang, Ji and Liu, Dan and He, Junjie and Huang, Chunliu and Liao, Jing and Wang, Yingzhao and Feng, Yongyi and Li, Hongyu and Liu, Xiuying and Chen, Lingdan and Yi, Wei and Chen, Xi and Bai, Hong-Min and Wang, Xinyu and Li, Yiyi and Wang, Lixiang and Liang, Zhigang and Ren, Xianwen and Qiu, Li and Hui, Yuan and Zhang, Qingling and Leng, Qibin and Chen, Jun and Jia, Guangshuai},
  year = {2023},
  month = July,
  pages = {1273–1291}
}