Collections / geo-gse221106

geo-gse221106

Datasets8
Size~95.0 MB
AssayVizgen MERSCOPE
Samplemouse · olfactory bulb
KindOther
Flag a data issue
Download the whole collection
Python · sddb client 
from sddb import Catalog

cohort = Catalog().collection("geo-gse221106")
cohort.members        # the 8 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse221106")
coll.ordered_artifacts.to_dataframe()   # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Install (Python 3.12+) Docs →
Shell 
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse221106 --dest data/
Install (Python 3.12+) Docs →

Licenses: 8 NCBI GEO policy

Member datasets · 8
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845435
mouse olfactory bulb 20.7 MB 67,611 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
Size20.7 MB
Cells67,611
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845431
mouse olfactory bulb 8.8 MB 30,947 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
Size8.8 MB
Cells30,947
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845433
mouse olfactory bulb 9.3 MB 29,520 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
Size9.3 MB
Cells29,520
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845429
mouse olfactory bulb 13.0 MB 38,648 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
Size13.0 MB
Cells38,648
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845430
mouse olfactory bulb Streptococcus pyogenes infection, non-human animal 12.4 MB 36,539 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
ConditionStreptococcus pyogenes infection, non-human animal
Size12.4 MB
Cells36,539
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845434
mouse olfactory bulb Streptococcus pyogenes infection, non-human animal 10.0 MB 30,327 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
ConditionStreptococcus pyogenes infection, non-human animal
Size10.0 MB
Cells30,327
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845436
mouse olfactory bulb Streptococcus pyogenes infection, non-human animal 9.6 MB 29,551 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
ConditionStreptococcus pyogenes infection, non-human animal
Size9.6 MB
Cells29,551
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse olfactory bulb
GSM6845432
mouse olfactory bulb Streptococcus pyogenes infection, non-human animal 11.3 MB 41,242 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueolfactory bulb
ConditionStreptococcus pyogenes infection, non-human animal
Size11.3 MB
Cells41,242
silver NCBI GEO policy Open in Vitessce