Human liver
GSM6716964
human liver colorectal cancer 16.7 MB 3,379 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Spots3,379
silver H&E NCBI GEO policy
Collections / Liver metastases originating from 4 colorectal cancer patients (CRC-LM).
Liver metastases originating from 4 colorectal cancer patients (CRC-LM).
Using liver metastases from 4 colorectal cancer patients (CRC-LM), we explored one receptor: EGFR whose signaling triggers cell proliferation and is exacerbated in many tumors.
Datasets4
Size~89.8 MB
AssayVisium
Samplehuman · liver
KindOther
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("geo-gse217414")
cohort.members # the 4 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse217414")
coll.ordered_artifacts.to_dataframe() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse217414 --dest data/Licenses: 4 NCBI GEO policy
Member datasets · 4
Human liver
GSM6716963
human liver colorectal cancer 26.3 MB 2,887 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Spots2,887
silver H&E NCBI GEO policy
Human liver
GSM6716966
human liver colorectal cancer 14.5 MB 2,317 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Spots2,317
silver H&E NCBI GEO policy
Human liver
GSM6716965
human liver colorectal cancer 32.3 MB 2,091 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Spots2,091
silver H&E NCBI GEO policy
Cite this collection
No linked publication found — please cite the data source.