Collections / geo-gse214138

geo-gse214138

Datasets13

Size~105 MB

AssayDBiT-seq

Samplehuman · hippocampal formation

KindOther

Flag a data issue

Download the whole collection

Client Lamin CLI

Python · sddb client

from sddb import Catalog

cohort = Catalog().collection("geo-gse214138")
cohort.members        # the 13 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")

Install (Python 3.12+) Docs →

Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse214138")
coll.ordered_artifacts.to_dataframe()   # the 13 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

Install (Python 3.12+) Docs →

Shell

# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse214138 --dest data/

Install (Python 3.12+) Docs →

Licenses: 13 NCBI GEO policy

Member datasets · 13

DBiT-seq

Human hippocampal formation

GSM6600050

human hippocampal formation major depressive disorder 4.1 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size4.1 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600044

human hippocampal formation 8.1 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size8.1 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600046

human hippocampal formation 9.0 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size9.0 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600055

human hippocampal formation major depressive disorder 4.7 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size4.7 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600054

human hippocampal formation major depressive disorder 7.9 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size7.9 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600047

human hippocampal formation 9.7 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size9.7 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600053

human hippocampal formation major depressive disorder 9.3 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size9.3 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600051

human hippocampal formation major depressive disorder 13.8 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size13.8 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600052

human hippocampal formation major depressive disorder 11.0 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Conditionmajor depressive disorder

Size11.0 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600045

human hippocampal formation 4.2 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size4.2 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600048

human hippocampal formation 9.5 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size9.5 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600049

human hippocampal formation 4.3 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size4.3 MB

Pixels2,500

silver NCBI GEO policy

DBiT-seq

Human hippocampal formation

GSM6600043

human hippocampal formation 9.6 MB 2,500 pixels silver NCBI GEO policy

TechnologyDBiT-seq

Organismhuman

Tissuehippocampal formation

Size9.6 MB

Pixels2,500

silver NCBI GEO policy