Mouse liver
GSM7016926
mouse liver hepatoblastoma 64.9 MB 4,992 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueliver
Conditionhepatoblastoma
Spots4,992
silver H&E NCBI GEO policy
Collections / mousemodel_Heptablastoma spatial transcriptomics
mousemodel_Heptablastoma spatial transcriptomics
Lack of relevant animal models and cell lines hampers the understanding of hepatoblastoma and identification of therapeutic targets. We report a hepatoblastoma murine model that faithfully recapitulates the pathological features of mixed fetal and embryonic hepatoblastoma, with transcriptomics resembling the high-risk gene signatures of human disease
Datasets5
Size~330 MB
AssayVisium
Samplemouse · liver
KindOther
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("geo-gse195575")
cohort.members # the 5 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse195575")
coll.ordered_artifacts.to_dataframe() # the 5 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse195575 --dest data/Licenses: 5 NCBI GEO policy
Member datasets · 5
Mouse liver
GSM7016921
mouse liver hepatoblastoma 77.0 MB 4,992 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueliver
Conditionhepatoblastoma
Spots4,992
silver H&E NCBI GEO policy
Mouse liver
GSM7016924
mouse liver hepatoblastoma 59.9 MB 4,992 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueliver
Conditionhepatoblastoma
Spots4,992
silver H&E NCBI GEO policy
Mouse liver
GSM7016923
mouse liver hepatoblastoma 66.0 MB 4,989 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueliver
Conditionhepatoblastoma
Spots4,989
silver H&E NCBI GEO policy
Mouse liver
GSM7016922
mouse liver hepatoblastoma 62.5 MB 4,992 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueliver
Conditionhepatoblastoma
Spots4,992
silver H&E NCBI GEO policy
Cite this collection
No linked publication found — please cite the data source.