Collections / figshare-34557231

figshare-34557231

Datasets1
Size~37.6 MB
TechnologyVisium
Samplerat · hindlimb
KindPublication
Flag a data issue
10.6084/m9.figshare.34557231.v1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-34557231")
cohort.members        # the 1 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-34557231")
coll.ordered_artifacts.to_dataframe()   # the 1 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-34557231 --dest data/

Licenses: 1 CC BY 4.0

Open in Vitessce
Visium
Rat hindlimb
10x Genomics Visium spatial transcriptomics dataset for rat hindlimb allograft, sample R8 (R8)
rat hindlimb 37.6 MB 3,533 spots bronze H&E
TechnologyVisium
Organismrat
Tissuehindlimb
Size37.6 MB
Spots3,533
bronze H&E Open in Vitessce

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No linked publication found — please cite the data source.