Visium
Human uterine cervix
Visium expression matrices (WK2)
human uterine cervix 28.9 MB 1,425 spots bronze Under review H&E
TechnologyVisium
Organismhuman
Tissueuterine cervix
Spots1,425
bronze Under review H&E
Collections / figshare-33980842
figshare-33980842
Datasets4
Size~169 MB
TechnologyVisium
Samplehuman · uterine cervix
KindPublication
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("figshare-33980842")
cohort.members # the 4 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-33980842")
coll.ordered_artifacts.to_dataframe() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-33980842 --dest data/Licenses: 4 CC BY 4.0
Member datasets · 4
Visium
Human uterine cervix
Visium expression matrices (WK4)
human uterine cervix 75.8 MB 4,368 spots bronze Under review H&E
TechnologyVisium
Organismhuman
Tissueuterine cervix
Spots4,368
bronze Under review H&E
Visium
Human uterine cervix
Visium expression matrices (WK1)
human uterine cervix 36.3 MB 1,871 spots bronze Under review H&E
TechnologyVisium
Organismhuman
Tissueuterine cervix
Spots1,871
bronze Under review H&E
Visium
Human uterine cervix
Visium expression matrices (WK3)
human uterine cervix 28.4 MB 1,847 spots bronze Under review H&E
TechnologyVisium
Organismhuman
Tissueuterine cervix
Spots1,847
bronze Under review H&E
Cite this collection
No linked publication found — please cite the data source.