Collections / figshare-32190978

figshare-32190978

Datasets16
Size~10.6 GB
TechnologyXenium
Samplehuman · skin of back
KindPublication
Flag a data issue
10.48420/32190978.v1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-32190978")
cohort.members        # the 16 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-32190978")
coll.ordered_artifacts.to_dataframe()   # the 16 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-32190978 --dest data/

Licenses: 16 CC BY 4.0

Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_002_no_uv_no_micro)
human skin of back 294 MB 1,530 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size294 MB
Cells1,530
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_002_uv_positive_micro_positive)
human skin of back 295 MB 4,256 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size295 MB
Cells4,256
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_002_uv_positive_no_micro)
human skin of back 736 MB 6,498 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size736 MB
Cells6,498
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_001_no_uv_no_micro)
human skin of back 1.0 GB 10,574 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size1.0 GB
Cells10,574
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_001_uv_positive_micro_positive)
human skin of back 883 MB 14,457 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size883 MB
Cells14,457
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_001_no_uv_micro_positive)
human skin of back 506 MB 5,295 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size506 MB
Cells5,295
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_002_no_uv_micro_positive)
human skin of back 522 MB 4,500 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size522 MB
Cells4,500
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_003_uv_positive_no_micro)
human skin of back 1.3 GB 12,908 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size1.3 GB
Cells12,908
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_003_uv_positive_micro_positive)
human skin of back 500 MB 3,873 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size500 MB
Cells3,873
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_002_no_uv_no_micro)
human skin of back 454 MB 4,817 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size454 MB
Cells4,817
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_002_uv_positive_micro_positive)
human skin of back 149 MB 765 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size149 MB
Cells765
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_001_uv_positive_no_micro)
human skin of back 1.2 GB 15,840 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size1.2 GB
Cells15,840
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_003_no_uv_no_micro)
human skin of back 1.5 GB 10,187 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size1.5 GB
Cells10,187
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052569_002_uv_positive_no_micro)
human skin of back 350 MB 4,626 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size350 MB
Cells4,626
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_002_no_uv_micro_positive)
human skin of back 176 MB 1,803 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size176 MB
Cells1,803
Genes475
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human skin of back
Xenium spatial transcriptomics datasets from upper back skin of three healthy volunteers under UV-irradiated/non-disinfected, UV-irradiated/disinfected, non-irradiated/non-disinfected, and non-irradiated/disinfected conditions (0052858_003_no_uv_micro_positive)
human skin of back 644 MB 6,336 cells 475 genes bronze Under review
TechnologyXenium
Organismhuman
Tissueskin of back
Size644 MB
Cells6,336
Genes475
bronze Under review Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.