Collections / figshare-32004354

figshare-32004354

Datasets4
Size~2.6 GB
TechnologyVisium HD
Samplemouse · heart
KindPublication
Flag a data issue
10.6084/m9.figshare.32004354.v1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-32004354")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-32004354")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-32004354 --dest data/

Licenses: 4 CC BY 4.0

Open in Vitessce
Visium HD
Mouse heart
High-resolution spatial transcriptomics data of control and HFpEF mouse heart tissues, Control_Down
mouse heart 700 MB 387,722 bins bronze H&E
TechnologyVisium HD
Organismmouse
Tissueheart
Size700 MB
Bins387,722
bronze H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse heart
High-resolution spatial transcriptomics data of control and HFpEF mouse heart tissues, Control_Up
mouse heart 578 MB 322,083 bins bronze H&E
TechnologyVisium HD
Organismmouse
Tissueheart
Size578 MB
Bins322,083
bronze H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse heart
High-resolution spatial transcriptomics data of control and HFpEF mouse heart tissues, HFpEF_Up
mouse heart heart failure 653 MB 326,830 bins bronze Under review H&E
TechnologyVisium HD
Organismmouse
Tissueheart
Conditionheart failure
Size653 MB
Bins326,830
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse heart
High-resolution spatial transcriptomics data of control and HFpEF mouse heart tissues, HFpEF_Down
mouse heart heart failure 681 MB 394,314 bins bronze Under review H&E
TechnologyVisium HD
Organismmouse
Tissueheart
Conditionheart failure
Size681 MB
Bins394,314
bronze Under review H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.