Collections / figshare-29886158

figshare-29886158

Datasets15
Size~14.0 GB
TechnologyXenium
Samplehuman · kidney
KindPublication
Flag a data issue
10.6084/m9.figshare.29886158.v1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-29886158")
cohort.members        # the 15 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-29886158")
coll.ordered_artifacts.to_dataframe()   # the 15 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-29886158 --dest data/

Licenses: 15 CC BY 4.0

Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor2_region4)
human kidney clear cell renal carcinoma 191 MB 24,809 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size191 MB
Cells24,809
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region3)
human kidney clear cell renal carcinoma 333 MB 40,356 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size333 MB
Cells40,356
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor2_region2)
human kidney clear cell renal carcinoma 430 MB 50,490 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size430 MB
Cells50,490
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor2_region5)
human kidney clear cell renal carcinoma 1.2 GB 130,611 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size1.2 GB
Cells130,611
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor3_region1)
human kidney clear cell renal carcinoma 866 MB 95,241 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size866 MB
Cells95,241
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor4_region2)
human kidney clear cell renal carcinoma 2.9 GB 406,615 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size2.9 GB
Cells406,615
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor2_region1)
human kidney clear cell renal carcinoma 367 MB 36,270 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size367 MB
Cells36,270
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region1)
human kidney clear cell renal carcinoma 156 MB 26,064 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size156 MB
Cells26,064
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor3_region2)
human kidney clear cell renal carcinoma 5.3 GB 543,628 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size5.3 GB
Cells543,628
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region6)
human kidney clear cell renal carcinoma 119 MB 16,825 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size119 MB
Cells16,825
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor2_region3)
human kidney clear cell renal carcinoma 647 MB 74,750 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size647 MB
Cells74,750
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region4)
human kidney clear cell renal carcinoma 155 MB 19,351 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size155 MB
Cells19,351
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region5)
human kidney clear cell renal carcinoma 223 MB 33,978 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size223 MB
Cells33,978
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor4_region1)
human kidney clear cell renal carcinoma 1.0 GB 119,569 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size1.0 GB
Cells119,569
Genes380
bronze Under review Open in Vitessce
Open in Vitessce
Xenium
Human kidney
Xenium Renal Cell Carcinoma Unprocessed (tumor1_region2)
human kidney clear cell renal carcinoma 238 MB 36,222 cells 380 genes bronze Under review
TechnologyXenium
Organismhuman
Tissuekidney
Conditionclear cell renal carcinoma
Size238 MB
Cells36,222
Genes380
bronze Under review Open in Vitessce

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