Collections / figshare-29237660

figshare-29237660

Datasets4
Size~132 MB
TechnologyVisium
Samplehuman · oral cavity
KindPublication
Flag a data issue
10.6084/m9.figshare.29237660.v3 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-29237660")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-29237660")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-29237660 --dest data/

Licenses: 4 CC BY 4.0

Open in Vitessce
Visium
Human oral cavity
Visium spatial transcriptomics data for individual oral squamous cell carcinoma (OSCC) patients (A)
human oral cavity oral cavity squamous cell carcinoma 29.5 MB 2,899 spots bronze H&E
TechnologyVisium
Organismhuman
Tissueoral cavity
Conditionoral cavity squamous cell carcinoma
Size29.5 MB
Spots2,899
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human oral cavity
Visium spatial transcriptomics data for individual oral squamous cell carcinoma (OSCC) patients (B)
human oral cavity oral cavity squamous cell carcinoma 25.8 MB 3,000 spots bronze H&E
TechnologyVisium
Organismhuman
Tissueoral cavity
Conditionoral cavity squamous cell carcinoma
Size25.8 MB
Spots3,000
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human oral cavity
Visium spatial transcriptomics data for individual oral squamous cell carcinoma (OSCC) patients (C)
human oral cavity oral cavity squamous cell carcinoma 42.7 MB 2,872 spots bronze H&E
TechnologyVisium
Organismhuman
Tissueoral cavity
Conditionoral cavity squamous cell carcinoma
Size42.7 MB
Spots2,872
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human oral cavity
Visium spatial transcriptomics data for individual oral squamous cell carcinoma (OSCC) patients (D)
human oral cavity oral cavity squamous cell carcinoma 34.5 MB 3,234 spots bronze H&E
TechnologyVisium
Organismhuman
Tissueoral cavity
Conditionoral cavity squamous cell carcinoma
Size34.5 MB
Spots3,234
bronze H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.