Visium
Mouse lung
CellRanger analyzed Visium data (CKO_Visium)
mouse lung 33.8 MB 3,297 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuelung
Spots3,297
bronze H&E
Collections / figshare-25584672
figshare-25584672
Datasets3
Size~152 MB
TechnologyVisium
Samplemouse · lung
KindPublication
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("figshare-25584672")
cohort.members # the 3 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-25584672")
coll.ordered_artifacts.to_dataframe() # the 3 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-25584672 --dest data/Licenses: 3 CC BY 4.0
Member datasets · 3
Visium
Mouse lung
CellRanger analyzed Visium data (TKO_Visium)
mouse lung 61.9 MB 2,847 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuelung
Spots2,847
bronze H&E
Visium
Mouse lung
CellRanger analyzed Visium data (WT_Visium)
mouse lung 56.2 MB 3,601 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuelung
Spots3,601
bronze H&E
Cite this collection
No linked publication found — please cite the data source.