Collections / figshare-23972991

figshare-23972991

Datasets1
Size~993 MB
TechnologyCosMx SMI
Samplehuman · liver
KindPublication
Flag a data issue
10.6084/m9.figshare.23972991.v2 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-23972991")
cohort.members        # the 1 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-23972991")
coll.ordered_artifacts.to_dataframe()   # the 1 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-23972991 --dest data/

Licenses: 1 CC BY 4.0

Open in Vitessce
CosMx SMI
Human liver
Nanostring CosMx (HCC tumour LC36T, Run5275) [figshare 23972991]
human liver hepatocellular carcinoma 993 MB 71,528 cells 960 genes bronze
TechnologyCosMx SMI
Organismhuman
Tissueliver
Conditionhepatocellular carcinoma
Size993 MB
Cells71,528
Genes960
bronze Open in Vitessce

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