Visium
Mouse small intestine
code from SpaceFold paper (WTSI2)
mouse small intestine 34.2 MB 2,574 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Spots2,574
bronze H&E
Collections / figshare-19715029
figshare-19715029
Datasets4
Size~139 MB
TechnologyVisium
Samplemouse · multiple
KindPublication
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("figshare-19715029")
cohort.members # the 4 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-19715029")
coll.ordered_artifacts.to_dataframe() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-19715029 --dest data/Licenses: 4 CC BY 4.0
Member datasets · 4
Visium
Mouse large intestine
code from SpaceFold paper (WTLI2)
mouse large intestine 39.1 MB 2,180 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuelarge intestine
Spots2,180
bronze H&E
Visium
Mouse small intestine
code from SpaceFold paper (WTSI1)
mouse small intestine 28.6 MB 2,097 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Spots2,097
bronze H&E
Visium
Mouse large intestine
code from SpaceFold paper (WTLI1)
mouse large intestine 37.3 MB 2,096 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuelarge intestine
Spots2,096
bronze H&E
Cite this collection
No linked publication found — please cite the data source.