Collections / dryad-dryad.n2z34tn7x

dryad-dryad.n2z34tn7x

Datasets3
Size~2.9 GB
TechnologyCosMx SMI
Samplehuman · craniocervical region
KindPublication
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10.5061/dryad.n2z34tn7x ↗
Download the whole collection
Python · sddb client 
from sddb import Catalog

cohort = Catalog().collection("dryad-dryad-n2z34tn7x")
cohort.members        # the 3 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="dryad-dryad.n2z34tn7x")
coll.ordered_artifacts.to_dataframe()   # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Install (Python 3.12+) Docs →
Shell 
# sddb client: download every member .zarr into data/
sddb-cli download --collection dryad-dryad-n2z34tn7x --dest data/
Install (Python 3.12+) Docs →

Licenses: 3 CC0 1.0

Member datasets · 3
Open in Vitessce
CosMx SMI
Human craniocervical region
Data from: Integrated single-cell and spatial analysis reveals context-dependent myeloid-T cell interactions in the response to immune checkpoint blockade in head and neck squamous cell carcinoma (CosMx RNA TMA) (Run5545_TMAB)
human craniocervical region head and neck squamous cell carcinoma 823 MB 94,561 cells 960 genes bronze Under review CC0 1.0
TechnologyCosMx SMI
Organismhuman
Tissuecraniocervical region
Conditionhead and neck squamous cell carcinoma
Size823 MB
Cells94,561
Genes960
bronze Under review CC0 1.0 Open in Vitessce
Open in Vitessce
CosMx SMI
Human craniocervical region
Data from: Integrated single-cell and spatial analysis reveals context-dependent myeloid-T cell interactions in the response to immune checkpoint blockade in head and neck squamous cell carcinoma (CosMx RNA TMA) (Run5668_TMAC)
human craniocervical region head and neck squamous cell carcinoma 637 MB 79,416 cells 960 genes bronze Under review CC0 1.0
TechnologyCosMx SMI
Organismhuman
Tissuecraniocervical region
Conditionhead and neck squamous cell carcinoma
Size637 MB
Cells79,416
Genes960
bronze Under review CC0 1.0 Open in Vitessce
Open in Vitessce
CosMx SMI
Human craniocervical region
Data from: Integrated single-cell and spatial analysis reveals context-dependent myeloid-T cell interactions in the response to immune checkpoint blockade in head and neck squamous cell carcinoma (CosMx RNA TMA) (Run5607_TMAA)
human craniocervical region head and neck squamous cell carcinoma 1.4 GB 87,711 cells 960 genes bronze Under review CC0 1.0
TechnologyCosMx SMI
Organismhuman
Tissuecraniocervical region
Conditionhead and neck squamous cell carcinoma
Size1.4 GB
Cells87,711
Genes960
bronze Under review CC0 1.0 Open in Vitessce

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No linked publication found — please cite the data source.