Collections / Integrating spatial gene expression and breast tumour morphology via deep learning

Integrating spatial gene expression and breast tumour morphology via deep learning

Datasets84
Size~13.5 GB
Assayspatial transcriptomics
Samplemultiple · multiple
KindComparison
Flag a data issue
10.1126/science.aaf2403 ↗
Download the whole collection
Python · sddb client 
from sddb import Catalog

cohort = Catalog().collection("doi-10-1126-science-aaf2403")
cohort.members        # the 84 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="doi-10.1126/science.aaf2403")
coll.ordered_artifacts.to_dataframe()   # the 84 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Install (Python 3.12+) Docs →
Shell 
# sddb client: download every member .zarr into data/
sddb-cli download --collection doi-10-1126-science-aaf2403 --dest data/
Install (Python 3.12+) Docs →

Licenses: 84 CC BY-NC-SA 4.0

About the study

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Read the abstract at the source →
Member datasets · 84
spatial transcriptomics
Mouse brain
SPA12
mouse brain 150 MB 264 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size150 MB
Spots264
silver H&E
Open in Vitessce
spatial transcriptomics
Human breast
SPA81
human breast invasive ductal breast carcinoma 177 MB 548 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size177 MB
Spots548
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA56
human breast invasive ductal breast carcinoma 217 MB 597 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size217 MB
Spots597
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA86
human breast invasive ductal breast carcinoma 162 MB 434 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size162 MB
Spots434
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA11
mouse brain 83.2 MB 267 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size83.2 MB
Spots267
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA111
human breast invasive ductal breast carcinoma 144 MB 297 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size144 MB
Spots297
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA66
human breast invasive ductal breast carcinoma 175 MB 504 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size175 MB
Spots504
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA95
human breast invasive ductal breast carcinoma 189 MB 614 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size189 MB
Spots614
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA97
human breast invasive ductal breast carcinoma 169 MB 468 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size169 MB
Spots468
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA77
human breast invasive ductal breast carcinoma 104 MB 284 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size104 MB
Spots284
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA13
mouse brain 206 MB 269 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size206 MB
Spots269
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA114
human breast invasive ductal breast carcinoma 134 MB 301 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size134 MB
Spots301
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA54
human breast invasive ductal breast carcinoma 216 MB 601 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size216 MB
Spots601
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA90
human breast invasive ductal breast carcinoma 161 MB 338 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size161 MB
Spots338
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA85
human breast invasive ductal breast carcinoma 150 MB 435 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size150 MB
Spots435
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA63
human breast invasive ductal breast carcinoma 196 MB 518 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size196 MB
Spots518
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA14
mouse brain 182 MB 280 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size182 MB
Spots280
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA80
human breast invasive ductal breast carcinoma 134 MB 368 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size134 MB
Spots368
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA103
human breast invasive ductal breast carcinoma 217 MB 572 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size217 MB
Spots572
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA4
mouse brain 102 MB 282 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size102 MB
Spots282
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA10
mouse brain 102 MB 242 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size102 MB
Spots242
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA1
human breast invasive ductal breast carcinoma 109 MB 264 spots bronze H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size109 MB
Spots264
bronze H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA109
human breast invasive ductal breast carcinoma 154 MB 423 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size154 MB
Spots423
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA87
human breast invasive ductal breast carcinoma 164 MB 492 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size164 MB
Spots492
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA78
human breast invasive ductal breast carcinoma 136 MB 363 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size136 MB
Spots363
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA69
human breast invasive ductal breast carcinoma 182 MB 482 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size182 MB
Spots482
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA65
human breast invasive ductal breast carcinoma 191 MB 498 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size191 MB
Spots498
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA15
mouse brain 207 MB 267 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size207 MB
Spots267
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA112
human breast invasive ductal breast carcinoma 133 MB 292 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size133 MB
Spots292
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA68
human breast invasive ductal breast carcinoma 211 MB 478 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size211 MB
Spots478
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA100
human breast invasive ductal breast carcinoma 239 MB 695 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size239 MB
Spots695
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA76
human breast invasive ductal breast carcinoma 95.0 MB 283 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size95.0 MB
Spots283
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA79
human breast invasive ductal breast carcinoma 152 MB 362 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size152 MB
Spots362
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA116
human breast invasive ductal breast carcinoma 152 MB 357 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size152 MB
Spots357
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA94
human breast invasive ductal breast carcinoma 186 MB 603 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size186 MB
Spots603
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA51
human breast invasive ductal breast carcinoma 169 MB 421 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size169 MB
Spots421
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA113
human breast invasive ductal breast carcinoma 107 MB 318 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size107 MB
Spots318
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA5
mouse brain 102 MB 262 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size102 MB
Spots262
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA72
human breast invasive ductal breast carcinoma 186 MB 566 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size186 MB
Spots566
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA84
human breast invasive ductal breast carcinoma 158 MB 433 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size158 MB
Spots433
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA102
human breast invasive ductal breast carcinoma 218 MB 570 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size218 MB
Spots570
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA71
human breast invasive ductal breast carcinoma 220 MB 489 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size220 MB
Spots489
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA92
human breast invasive ductal breast carcinoma 154 MB 325 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size154 MB
Spots325
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA89
human breast invasive ductal breast carcinoma 158 MB 435 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size158 MB
Spots435
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA59
human breast invasive ductal breast carcinoma 173 MB 464 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size173 MB
Spots464
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA110
human breast invasive ductal breast carcinoma 151 MB 414 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size151 MB
Spots414
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA88
human breast invasive ductal breast carcinoma 162 MB 498 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size162 MB
Spots498
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA60
human breast invasive ductal breast carcinoma 133 MB 331 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size133 MB
Spots331
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA62
human breast invasive ductal breast carcinoma 121 MB 294 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size121 MB
Spots294
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA73
human breast invasive ductal breast carcinoma 188 MB 513 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size188 MB
Spots513
silver H&E Open in Vitessce
spatial transcriptomics
Human breast
SPA75
human breast invasive ductal breast carcinoma 94.1 MB 284 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size94.1 MB
Spots284
silver H&E
Open in Vitessce
spatial transcriptomics
Human breast
SPA70
human breast invasive ductal breast carcinoma 224 MB 502 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size224 MB
Spots502
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA74
human breast invasive ductal breast carcinoma 188 MB 506 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size188 MB
Spots506
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA67
human breast invasive ductal breast carcinoma 159 MB 473 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size159 MB
Spots473
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA93
human breast invasive ductal breast carcinoma 189 MB 511 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size189 MB
Spots511
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA99
human breast invasive ductal breast carcinoma 242 MB 713 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size242 MB
Spots713
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA82
human breast invasive ductal breast carcinoma 191 MB 578 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size191 MB
Spots578
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA115
human breast invasive ductal breast carcinoma 123 MB 316 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size123 MB
Spots316
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA7
mouse brain 91.7 MB 237 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size91.7 MB
Spots237
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA117
human breast invasive ductal breast carcinoma 130 MB 334 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size130 MB
Spots334
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA58
human breast invasive ductal breast carcinoma 175 MB 480 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size175 MB
Spots480
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA106
human breast invasive ductal breast carcinoma 168 MB 428 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size168 MB
Spots428
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA55
human breast invasive ductal breast carcinoma 232 MB 687 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size232 MB
Spots687
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA2
human breast invasive ductal breast carcinoma 108 MB 251 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size108 MB
Spots251
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA52
human breast invasive ductal breast carcinoma 169 MB 340 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size169 MB
Spots340
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA101
human breast invasive ductal breast carcinoma 239 MB 691 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size239 MB
Spots691
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA53
human breast invasive ductal breast carcinoma 187 MB 402 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size187 MB
Spots402
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA57
human breast invasive ductal breast carcinoma 163 MB 478 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size163 MB
Spots478
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA98
human breast invasive ductal breast carcinoma 170 MB 441 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size170 MB
Spots441
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA8
mouse brain 94.7 MB 234 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size94.7 MB
Spots234
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA105
human breast invasive ductal breast carcinoma 143 MB 437 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size143 MB
Spots437
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA108
human breast invasive ductal breast carcinoma 132 MB 403 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size132 MB
Spots403
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA0
human breast invasive ductal breast carcinoma 98.3 MB 262 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size98.3 MB
Spots262
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA64
human breast invasive ductal breast carcinoma 197 MB 454 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size197 MB
Spots454
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA104
human breast invasive ductal breast carcinoma 205 MB 587 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size205 MB
Spots587
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA118
human breast invasive ductal breast carcinoma 131 MB 256 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size131 MB
Spots256
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA61
human breast invasive ductal breast carcinoma 134 MB 318 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size134 MB
Spots318
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA83
human breast invasive ductal breast carcinoma 183 MB 565 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size183 MB
Spots565
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA3
human breast invasive ductal breast carcinoma 115 MB 254 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size115 MB
Spots254
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA6
mouse brain 110 MB 281 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size110 MB
Spots281
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA107
human breast invasive ductal breast carcinoma 221 MB 432 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size221 MB
Spots432
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA96
human breast invasive ductal breast carcinoma 143 MB 464 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size143 MB
Spots464
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA9
mouse brain 94.4 MB 231 spots silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size94.4 MB
Spots231
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA91
human breast invasive ductal breast carcinoma 163 MB 297 spots silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size163 MB
Spots297
silver H&E Open in Vitessce

Cite this collection

doi.org/10.1126/science.aaf2403 ↗
BibTeX 
@article{St_hl_2016,
  title = {Visualization and analysis of gene expression in tissue sections by spatial transcriptomics},
  volume = {353},
  ISSN = {1095-9203},
  url = {http://dx.doi.org/10.1126/science.aaf2403},
  DOI = {10.1126/science.aaf2403},
  number = {6294},
  journal = {Science},
  publisher = {American Association for the Advancement of Science (AAAS)},
  author = {Ståhl, Patrik L. and Salmén, Fredrik and Vickovic, Sanja and Lundmark, Anna and Navarro, José Fernández and Magnusson, Jens and Giacomello, Stefania and Asp, Michaela and Westholm, Jakub O. and Huss, Mikael and Mollbrink, Annelie and Linnarsson, Sten and Codeluppi, Simone and Borg, Åke and Pontén, Fredrik and Costea, Paul Igor and Sahlén, Pelin and Mulder, Jan and Bergmann, Olaf and Lundeberg, Joakim and Frisén, Jonas},
  year = {2016},
  month = July,
  pages = {78–82}
}