Collections / bia-s-biad2091

bia-s-biad2091

Datasets68
Size~2.8 GB
AssayImaging Mass Cytometry
Samplehuman · liver
KindOther
Flag a data issue
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("bia-s-biad2091")
cohort.members        # the 68 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="bia-s-biad2091")
coll.ordered_artifacts.to_dataframe()   # the 68 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection bia-s-biad2091 --dest data/

Licenses: 68 CC0 1.0

Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_038
human liver 35.3 MB 1,931 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size35.3 MB
Cells1,931
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_009
human liver 38.0 MB 3,948 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size38.0 MB
Cells3,948
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis_TMA_5_01262022_003
human liver cirrhosis of liver 52.6 MB 6,547 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size52.6 MB
Cells6,547
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_027
human liver 37.1 MB 5,871 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.1 MB
Cells5,871
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_032
human liver 37.5 MB 3,058 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.5 MB
Cells3,058
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_002
human liver cirrhosis of liver 48.0 MB 4,838 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size48.0 MB
Cells4,838
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_015
human liver 39.5 MB 4,762 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size39.5 MB
Cells4,762
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_009
human liver cirrhosis of liver 44.7 MB 4,080 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size44.7 MB
Cells4,080
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_034
human liver 42.4 MB 5,305 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.4 MB
Cells5,305
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_004
human liver cirrhosis of liver 40.3 MB 4,609 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size40.3 MB
Cells4,609
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_005
human liver cirrhosis of liver 44.5 MB 7,385 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size44.5 MB
Cells7,385
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_01062022_009
human liver cirrhosis of liver 46.1 MB 7,378 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size46.1 MB
Cells7,378
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_003
human liver cirrhosis of liver 43.2 MB 6,135 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size43.2 MB
Cells6,135
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_01062022_005
human liver cirrhosis of liver 51.4 MB 4,496 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size51.4 MB
Cells4,496
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_001
human liver 24.0 MB 5,521 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size24.0 MB
Cells5,521
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_012
human liver 37.3 MB 4,821 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.3 MB
Cells4,821
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_037
human liver 42.0 MB 6,171 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.0 MB
Cells6,171
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_003
human liver 35.2 MB 5,381 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size35.2 MB
Cells5,381
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis_TMA_5_01262022_005
human liver cirrhosis of liver 52.9 MB 7,395 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size52.9 MB
Cells7,395
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_042
human liver 47.4 MB 3,550 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size47.4 MB
Cells3,550
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_016
human liver cirrhosis of liver 46.6 MB 4,748 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size46.6 MB
Cells4,748
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_011
human liver cirrhosis of liver 43.0 MB 4,466 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size43.0 MB
Cells4,466
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis_TMA_5_01262022_002
human liver cirrhosis of liver 52.2 MB 4,655 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size52.2 MB
Cells4,655
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_006
human liver cirrhosis of liver 50.1 MB 5,957 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size50.1 MB
Cells5,957
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_013
human liver 37.8 MB 5,238 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.8 MB
Cells5,238
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_01062022_006
human liver cirrhosis of liver 56.4 MB 9,137 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size56.4 MB
Cells9,137
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_019
human liver 37.6 MB 6,125 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.6 MB
Cells6,125
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_028
human liver 46.4 MB 8,435 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size46.4 MB
Cells8,435
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_036
human liver 39.1 MB 2,466 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size39.1 MB
Cells2,466
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_01062022_007
human liver cirrhosis of liver 49.6 MB 8,260 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size49.6 MB
Cells8,260
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_014
human liver cirrhosis of liver 44.4 MB 3,655 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size44.4 MB
Cells3,655
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_022
human liver 42.5 MB 6,364 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.5 MB
Cells6,364
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_025
human liver 35.7 MB 2,467 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size35.7 MB
Cells2,467
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_021
human liver 37.1 MB 4,867 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.1 MB
Cells4,867
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_001
human liver cirrhosis of liver 45.5 MB 5,068 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size45.5 MB
Cells5,068
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_016
human liver 42.2 MB 5,369 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.2 MB
Cells5,369
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_01062022_008
human liver cirrhosis of liver 45.1 MB 5,826 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size45.1 MB
Cells5,826
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_008
human liver cirrhosis of liver 43.8 MB 7,537 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size43.8 MB
Cells7,537
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_005
human liver 33.4 MB 4,869 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size33.4 MB
Cells4,869
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_044
human liver 44.3 MB 3,277 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size44.3 MB
Cells3,277
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_006
human liver 31.8 MB 3,697 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size31.8 MB
Cells3,697
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis_TMA_5_01262022_004
human liver cirrhosis of liver 56.5 MB 6,000 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size56.5 MB
Cells6,000
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_013
human liver cirrhosis of liver 43.7 MB 4,603 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size43.7 MB
Cells4,603
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_004
human liver 33.8 MB 3,567 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size33.8 MB
Cells3,567
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_024
human liver 39.5 MB 6,783 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size39.5 MB
Cells6,783
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_029
human liver 42.9 MB 3,328 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.9 MB
Cells3,328
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_023
human liver 38.3 MB 5,316 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size38.3 MB
Cells5,316
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_045
human liver 42.1 MB 5,175 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size42.1 MB
Cells5,175
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_035
human liver 44.0 MB 3,984 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size44.0 MB
Cells3,984
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_041
human liver 49.2 MB 5,185 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size49.2 MB
Cells5,185
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_010
human liver 39.0 MB 6,980 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size39.0 MB
Cells6,980
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_012
human liver cirrhosis of liver 43.3 MB 4,741 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size43.3 MB
Cells4,741
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_015
human liver cirrhosis of liver 47.4 MB 4,882 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size47.4 MB
Cells4,882
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_011
human liver 36.0 MB 4,703 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size36.0 MB
Cells4,703
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_031
human liver 37.9 MB 3,733 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.9 MB
Cells3,733
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_007
human liver 36.9 MB 3,959 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size36.9 MB
Cells3,959
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_026
human liver 40.8 MB 5,536 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size40.8 MB
Cells5,536
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_033
human liver 35.6 MB 3,748 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size35.6 MB
Cells3,748
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_017
human liver 37.5 MB 5,663 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size37.5 MB
Cells5,663
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_018
human liver 36.9 MB 5,249 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size36.9 MB
Cells5,249
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_030
human liver 43.5 MB 7,295 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size43.5 MB
Cells7,295
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_014
human liver 33.8 MB 3,468 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size33.8 MB
Cells3,468
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis_TMA_5_01262022_001
human liver cirrhosis of liver 51.2 MB 4,839 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size51.2 MB
Cells4,839
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_002
human liver 29.2 MB 4,831 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size29.2 MB
Cells4,831
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_008
human liver 35.7 MB 4,528 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size35.7 MB
Cells4,528
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_040
human liver 44.1 MB 4,873 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size44.1 MB
Cells4,873
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:Cirrhosis-TMA-5_New_Detector_007
human liver cirrhosis of liver 47.1 MB 8,474 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Conditioncirrhosis of liver
Size47.1 MB
Cells8,474
bronze CC0 1.0
Imaging Mass Cytometry
Human liver
S-BIAD2091:NASH_HCC_TMA-2_020
human liver 36.4 MB 4,041 cells bronze CC0 1.0
TechnologyImaging Mass Cytometry
Organismhuman
Tissueliver
Size36.4 MB
Cells4,041
bronze CC0 1.0