Collections / bia-s-biad1579

bia-s-biad1579

Datasets32
Size~14.1 GB
AssayMIBI-TOF
Samplehuman · brain
KindPublication
Flag a data issue
10.1016/j.ccell.2025.11.006 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("bia-s-biad1579")
cohort.members        # the 32 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="bia-s-biad1579")
coll.ordered_artifacts.to_dataframe()   # the 32 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection bia-s-biad1579 --dest data/

Licenses: 32 CC0 1.0

Multi-omic landscape of human gliomas from diagnosis to treatment and recurrence.

Read the abstract at the source →
MIBI-TOF
Human brain
S-BIAD1579:UCLA_R4C5
human brain glioma 96.7 MB 392 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size96.7 MB
Obs392
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R2C6
human brain glioma 306 MB 2,468 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size306 MB
Obs2,468
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:Stanford_TA550_R99C3
human brain glioma 600 MB 9,434 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size600 MB
Obs9,434
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA2_R6C3
human brain glioma 632 MB 2,465 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size632 MB
Obs2,465
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA5_R8C1
human brain glioma 202 MB 2,153 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size202 MB
Obs2,153
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R3C6
human brain glioma 391 MB 1,922 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size391 MB
Obs1,922
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R99C1
human brain glioma 542 MB 8,431 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size542 MB
Obs8,431
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R98C2
human brain glioma 373 MB 1,900 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size373 MB
Obs1,900
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R7C4
human brain glioma 476 MB 1,961 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size476 MB
Obs1,961
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R5C2
human brain glioma 403 MB 1,993 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size403 MB
Obs1,993
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R98C3
human brain glioma 602 MB 10,649 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size602 MB
Obs10,649
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R6C5
human brain glioma 433 MB 1,503 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size433 MB
Obs1,503
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R7C3
human brain glioma 400 MB 1,860 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size400 MB
Obs1,860
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCLA_R99C1
human brain glioma 591 MB 8,785 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size591 MB
Obs8,785
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:CHOP_941_R2C7
human brain glioma 107 MB 1,280 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size107 MB
Obs1,280
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:CoH_C001_R6C3
human brain glioma 557 MB 778 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size557 MB
Obs778
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R6C3
human brain glioma 475 MB 2,124 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size475 MB
Obs2,124
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:Stanford_TA552_R10C5
human brain glioma 516 MB 2,296 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size516 MB
Obs2,296
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R99C2
human brain glioma 588 MB 12,152 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size588 MB
Obs12,152
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:CoH_C001_R6C1
human brain glioma 664 MB 3,248 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size664 MB
Obs3,248
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R4C3
human brain glioma 546 MB 1,817 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size546 MB
Obs1,817
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R6C4
human brain glioma 493 MB 3,588 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size493 MB
Obs3,588
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R7C1
human brain glioma 562 MB 2,042 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size562 MB
Obs2,042
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:CHOP_907_R1C6
human brain glioma 56.6 MB 3 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size56.6 MB
Obs3
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R8C4
human brain glioma 118 MB 2,169 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size118 MB
Obs2,169
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R3C2
human brain glioma 413 MB 1,583 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size413 MB
Obs1,583
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA2_R5C4
human brain glioma 590 MB 3,533 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size590 MB
Obs3,533
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA6_R2C4
human brain glioma 551 MB 1,699 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size551 MB
Obs1,699
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA5_R98C3
human brain glioma 570 MB 10,894 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size570 MB
Obs10,894
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:CoH_C001_R5C1
human brain glioma 139 MB 436 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size139 MB
Obs436
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA1_R99C3
human brain glioma 570 MB 10,137 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size570 MB
Obs10,137
bronze CC0 1.0
MIBI-TOF
Human brain
S-BIAD1579:UCSF_TA2_R99C3
human brain glioma 563 MB 8,520 obs bronze CC0 1.0
TechnologyMIBI-TOF
Organismhuman
Tissuebrain
Conditionglioma
Size563 MB
Obs8,520
bronze CC0 1.0

Cite this collection

No linked publication found — please cite the data source.